Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11641675 chr16:90031427 T/A 1.23E-8 171 25.67 20.28 6.62 KM Plot
PCPG rs11641713 chr16:90134325 C/A 8.72E-9 176 25.87 20.17 6.62 KM Plot
PCPG rs11641726 chr16:89891619 G/A 0.000192 173 25.87 21.5 36.37 KM Plot
PCPG rs11641897 chr16:89927265 C/T 0.000185 173 25.87 22.63 36.37 KM Plot
PCPG rs11642010 chr16:89845111 T/C 0 175 25.87 20.13 3.17 KM Plot
PCPG rs11642106 chr16:85226751 T/G 1.76E-7 171 25.92 23.43 17.43 KM Plot
PCPG rs11642267 chr16:89957635 T/C 0.000167 176 25.87 20.28 36.37 KM Plot
PCPG rs11642451 chr16:89958127 T/C 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs11642820 chr16:90142455 G/C 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs11642823 chr16:90132786 C/T 6.43E-9 178 6.62 20.28 25.77 KM Plot
PCPG rs11642999 chr16:90118119 C/T 6.56E-9 178 25.77 20.28 6.62 KM Plot
PCPG rs11643086 chr16:89928498 G/A 0.000199 172 25.87 22.63 36.37 KM Plot
PCPG rs11643147 chr16:90038647 A/G 1.26E-8 171 25.77 20.2 6.62 KM Plot
PCPG rs11643204 chr16:89897930 C/T 0.000207 171 25.87 21.5 36.37 KM Plot
PCPG rs11643231 chr16:90148217 T/G 8.74E-9 176 25.87 20.2 6.62 KM Plot